PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 641aa    MW: 69906.5 Da    PI: 6.1755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935028.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12461505554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h e+Er+RR+++N++f  Lr  +P+       K++Ka+ L  A+ YI++L
  XP_010935028.1 461 HVEAERQRREKLNQRFYALRAEVPNV-----SKMDKASLLADAISYIREL 505
                     899**********************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-5642221IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.882456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17459528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9461505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-15461510No hitNo description
Gene3DG3DSA:4.10.280.102.7E-17461526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MNLWTDDTSS MMEAFVASSS DLPYFQWPQP LPPPPYLSHE SLQHRLQTLI EGARDSWTYA  60
IFWQSSADAA SGAALLGWGD GYYKGFQEDK RTRRAAASGS EQEHRKRVLR ELNCLISSGA  120
APDDAVEEEV TDMEWFFLVS MTQSFIAGVG LPGQALLSGA PVWIAGGDRM AAAQCDRARQ  180
AHAFGLQTMA CIPVGSGVLE LGSTERIFQS FEMVAKVRAF FSFGGRETAA IGSWSLPPPI  240
QTAAETDPSV LWISDPIAPA PPAPEIPVSK PPSQFENPNS SSLTENPSPF PIPQRSSPPP  300
PPPQSSSTNP HTQSFLDVSL SESGLKAFPS APTCKPETCD FSNYGESKRN PSTVAANGGF  360
FFHHSISTEN KNKKSTGATS KGSNNEGMLS FSSAATAVAA ADWSRPASGG CTTGLLAGDS  420
DHSDLEASVR EVESSRVAEP EKRPRKRGRK PANGREEPLD HVEAERQRRE KLNQRFYALR  480
AEVPNVSKMD KASLLADAIS YIRELRSKLQ SLELDREGLH SQIDVLKKER DLTLARPSPP  540
LDNDLKAVVN GGSRCHGVEV EVKILGREAM IRVHCNKRYH PAARLMMALK ELDLEVSYAS  600
VSVVNDLMIQ QATVNMLSRS YTQEQLTAAL FARITEPPTL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-58621712227Transcription factor MYC3
4ywc_A1e-58621712227Transcription factor MYC3
4ywc_B1e-58621712227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441449KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935028.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0G2RLM20.0A0A0G2RLM2_9ASPA; MYC transcription factor
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-137bHLH family protein